BclAF1 restriction factor is neutralized by proteasomal degradation and microRNA repression during human cytomegalovirus infection.

Lee SH, Kalejta RF, Kerry J, Semmes OJ, O'Connor CM, Khan Z, Garcia BA, Shenk T, Murphy E.

Proc Natl Acad Sci U S A. 2012 Jun 12;109(24):9575-80. Epub 2012 May 29.

PMID:22645331

Identification of prostate-enriched proteins by in-depth proteomic analyses of expressed prostatic secretions in urine.

Principe S, Kim Y, Fontana S, Ignatchenko V, Nyalwidhe JO, Lance RS, Troyer DA, Alessandro R, Semmes OJ, Kislinger T, Drake RR, Medin JA.

J Proteome Res. 2012 Apr 6;11(4):2386-96. Epub 2012 Feb 29.

PMID:22339264

Cazares LH, Drake RR, Esquela-Kirscher A, Lance RS, Semmes OJ, Troyer DA.

Cancer Biomark. 2010;9(1-6):441-59. Review.

PMID:22112489

The Sumo-targeted ubiquitin ligase RNF4 regulates the localization and function of the HTLV-1 oncoprotein Tax.

Fryrear KA, Guo X, Kerscher O, Semmes OJ.

Blood. 2012 Feb 2;119(5):1173-81. Epub 2011 Nov 21.

PMID:22106342

Laskin J, Heath BS, Roach PJ, Cazares L, Semmes OJ.

Anal Chem. 2012 Jan 3;84(1):141-8. Epub 2011 Dec 1.

PMID:22098105

Functional and physical interaction between the mismatch repair and FA-BRCA pathways.

Williams SA, Wilson JB, Clark AP, Mitson-Salazar A, Tomashevski A, Ananth S, Glazer PM, Semmes OJ, Bale AE, Jones NJ, Kupfer GM.

Hum Mol Genet. 2011 Nov 15;20(22):4395-410. Epub 2011 Aug 24.

PMID:21865299

Using boronolectin in MALDI-MS imaging for the histological analysis of cancer tissue expressing the sialyl Lewis X antigen.

Dai C, Cazares LH, Wang L, Chu Y, Wang SL, Troyer DA, Semmes OJ, Drake RR, Wang B.

Chem Commun (Camb). 2011 Oct 7;47(37):10338-40. Epub 2011 Aug 19.

PMID:21853197

Improved signal processing and normalization for biomarker protein detection in broad-mass-range TOF mass spectra from clinical samples.

Tracy MB, Cooke WE, Gatlin CL, Cazares LH, Weaver DM, Semmes OJ, Tracy ER, Manos DM, Malyarenko DI.

Proteomics Clin Appl. 2011 Aug;5(7-8):440-7. doi: 10.1002/prca.201000095. Epub 2011 Jul 13.

PMID:21751409

Direct and specific binding of the UL16 tegument protein of herpes simplex virus to the cytoplasmic tail of glycoprotein E.

Yeh PC, Han J, Chadha P, Meckes DG Jr, Ward MD, Semmes OJ, Wills JW.

J Virol. 2011 Sep;85(18):9425-36. Epub 2011 Jul 6.

PMID:21734044

A proteomic study of TAR-RNA binding protein (TRBP)-associated factors.

Chi YH, Semmes OJ, Jeang KT.

Cell Biosci. 2011 Feb 25;1(1):9.

PMID:21711701

Human endogenous retrovirus transcription profiles of the kidney and kidney-derived cell lines.

Haupt S, Tisdale M, Vincendeau M, Clements MA, Gauthier DT, Lance R, Semmes OJ, Turqueti-Neves A, Noessner E, Leib-Mösch C, Greenwood AD.

J Gen Virol. 2011 Oct;92(Pt 10):2356-66. Epub 2011 Jun 22.

PMID:21697344

On-tissue identification of insulin: in situ reduction coupled with mass spectrometry imaging.

Green-Mitchell SM, Cazares LH, Semmes OJ, Nadler JL, Nyalwidhe JO.

Proteomics Clin Appl. 2011 Aug;5(7-8):448-53. doi: 10.1002/prca.201000152. Epub 2011 Jun 8.

PMID:21656913

MALDI tissue imaging: from biomarker discovery to clinical applications.

Cazares LH, Troyer DA, Wang B, Drake RR, Semmes OJ.

Anal Bioanal Chem. 2011 Jul;401(1):17-27. Epub 2011 May 4. Review.

PMID:21541816

Targeted identification of metastasis-associated cell-surface sialoglycoproteins in prostate cancer.

Yang L, Nyalwidhe JO, Guo S, Drake RR, Semmes OJ.

Mol Cell Proteomics. 2011 Jun;10(6):M110.007294. Epub 2011 Mar 29.

PMID:21447706

Challenges to developing proteomic-based breast cancer diagnostics.

Drake RR, Cazares LH, Jones EE, Fuller TW, Semmes OJ, Laronga C.

OMICS. 2011 May;15(5):251-9. Epub 2011 Feb 19. Review.

PMID:21332380

Enhancement in MALDI-TOF MS analysis of the low molecular weight human serum proteome.

Gatlin CL, White KY, Tracy MB, Wilkins CE, Semmes OJ, Nyalwidhe JO, Drake RR, Malyarenko DI.

J Mass Spectrom. 2011 Jan;46(1):85-9. No abstract available.

PMID:21190259

Investigation of sialylation aberration in N-linked glycopeptides by lectin and tandem labeling (LTL) quantitative proteomics.

Shetty V, Nickens Z, Shah P, Sinnathamby G, Semmes OJ, Philip R.

Anal Chem. 2010 Nov 15;82(22):9201-10. Epub 2010 Oct 5.

PMID:20923142

Recommendations for biomarker identification and qualification in clinical proteomics.

Mischak H, Allmaier G, Apweiler R, Attwood T, Baumann M, Benigni A, Bennett SE, Bischoff R, Bongcam-Rudloff E, Capasso G, Coon JJ, D'Haese P, Dominiczak AF, Dakna M, Dihazi H, Ehrich JH, Fernandez-Llama P, Fliser D, Frokiaer J, Garin J, Girolami M, Hancock WS, Haubitz M, Hochstrasser D, Holman RR, Ioannidis JP, Jankowski J, Julian BA, Klein JB, Kolch W, Luider T, Massy Z, Mattes WB, Molina F, Monsarrat B, Novak J, Peter K, Rossing P, Sánchez-Carbayo M, Schanstra JP, Semmes OJ, Spasovski G, Theodorescu D, Thongboonkerd V, Vanholder R, Veenstra TD, Weissinger E, Yamamoto T, Vlahou A.

Sci Transl Med. 2010 Aug 25;2(46):46ps42.

PMID:20739680

The viral oncoprotein tax sequesters DNA damage response factors by tethering MDC1 to chromatin.

Belgnaoui SM, Fryrear KA, Nyalwidhe JO, Guo X, Semmes OJ.

J Biol Chem. 2010 Oct 22;285(43):32897-905. Epub 2010 Aug 20.

Guo X, Ward MD, Tiedebohl JB, Oden YM, Nyalwidhe JO, Semmes OJ.

J Biol Chem. 2010 Oct 22;285(43):33348-57. Epub 2010 Aug 16.

PMID:20713355

Purification of FANCD2 sub-complexes.

Zhi G, Chen X, Newcomb W, Brown J, Semmes OJ, Kupfer GM.

Br J Haematol. 2010 Jul;150(1):88-92. Epub 2010 Apr 29.

PMID:20456353

A Bayesian network approach to feature selection in mass spectrometry data.

Kuschner KW, Malyarenko DI, Cooke WE, Cazares LH, Semmes OJ, Tracy ER.

BMC Bioinformatics. 2010 Apr 8;11:177.

PMID:20377906

In-depth proteomic analyses of direct expressed prostatic secretions.

Drake RR, Elschenbroich S, Lopez-Perez O, Kim Y, Ignatchenko V, Ignatchenko A, Nyalwidhe JO, Basu G, Wilkins CE, Gjurich B, Lance RS, Semmes OJ, Medin JA, Kislinger T.

J Proteome Res. 2010 May 7;9(5):2109-16.

PMID:20334419

Interaction domains of the UL16 and UL21 tegument proteins of herpes simplex virus.

Harper AL, Meckes DG Jr, Marsh JA, Ward MD, Yeh PC, Baird NL, Wilson CB, Semmes OJ, Wills JW.

J Virol. 2010 Mar;84(6):2963-71. Epub 2009 Dec 30.

PMID:20042500

Phosphorylation regulates human T-cell leukemia virus type 1 Rex function.

Kesic M, Doueiri R, Ward M, Semmes OJ, Green PL.

Retrovirology. 2009 Nov 17;6:105.

PMID:19919707

Mining the low molecular weight proteome of blood.

Drake RR, Cazares L, Semmes OJ.

Proteomics Clin Appl. 2007 Aug;1(8):758-68. doi: 10.1002/prca.200700175. Epub 2007 Jul 10.

PMID:21136732

Clinical proteomics: A need to define the field and to begin to set adequate standards.

Mischak H, Apweiler R, Banks RE, Conaway M, Coon J, Dominiczak A, Ehrich JH, Fliser D, Girolami M, Hermjakob H, Hochstrasser D, Jankowski J, Julian BA, Kolch W, Massy ZA, Neusuess C, Novak J, Peter K, Rossing K, Schanstra J, Semmes OJ, Theodorescu D, Thongboonkerd V, Weissinger EM, Van Eyk JE, Yamamoto T.

Proteomics Clin Appl. 2007 Feb;1(2):148-56. doi: 10.1002/prca.200600771. Epub 2007 Jan 22.

PMID:21136664

The need for review and understanding of SELDI/MALDI mass spectroscopy data prior to analysis.

Grizzle WE, Semmes OJ, Bigbee W, Zhu L, Malik G, Oelschlager DK, Manne B, Manne U.

Cancer Inform. 2005;1:86-97.

PMID:19305634

Characterization of a pigment-dispersing hormone in eyestalks of the fiddler crab Uca pugilator.

Rao KR, Riehm JP, Zahnow CA, Kleinholz LH, Tarr GE, Johnson L, Norton S, Landau M, Semmes OJ, Sattelberg RM, Jorenby WH, Hintz MF.

Proc Natl Acad Sci U S A. 1985 Aug;82(16):5319-22.

PMID:16593589